Hamming Distance Matrix For Multiple Sequences

I have a FASTA file with IDs and corresponding DNA sequences which I have parsed and stored into a dictionary. I now need to write a Python program compute the pairwise Hamming dis

Solution 1:

Try using the sklearn package, it has a function to calculate pairwise distances with a specified distance metric. You can find the function here: https://scikit-learn.org/stable/modules/generated/sklearn.metrics.pairwise_distances.html.