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Showing posts with the label Snakemake
How To Use Expand In Snakemake When Some Particular Combinations Of Wildcards Are Not Desired?

How To Use Expand In Snakemake When Some Particular Combinations Of Wildcards Are Not Desired?

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Let's suppose that I have the following files, on which I want to apply some processing automat… Read more How To Use Expand In Snakemake When Some Particular Combinations Of Wildcards Are Not Desired?
Parallelizing Snakemake Rule

Parallelizing Snakemake Rule

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Sorry if this is a naive question, but I'm still trying to wrap my head around the intricacies … Read more Parallelizing Snakemake Rule
Use Of Argparse In Snakemake Script

Use Of Argparse In Snakemake Script

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Is it possible to pass custom command line arguments to snakemake scripts? I have tried, but execut… Read more Use Of Argparse In Snakemake Script
Snakemake - Problem Trying To Use Global_wildcards (TypeError: Expected Str, Got List)

Snakemake - Problem Trying To Use Global_wildcards (TypeError: Expected Str, Got List)

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I'm a newbie using Snakemake and not an expert in Python neither so the answer might be quite o… Read more Snakemake - Problem Trying To Use Global_wildcards (TypeError: Expected Str, Got List)
Snakemake Workflow On Split Files

Snakemake Workflow On Split Files

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Perhaps this question has already been answered but I could not come up with the correct query to f… Read more Snakemake Workflow On Split Files